IL_9BDN_082

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_082 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1492

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

9BDN|1|A18S|G|1563
9BDN|1|A18S|C|1564
9BDN|1|A18S|C|1565
*
9BDN|1|A18S|G|1570
9BDN|1|A18S|G|1571
9BDN|1|A18S|C|1572

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS19

Small ribosomal subunit protein eS19