IL_9BDN_083

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_083 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0884

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

9BDN|1|A18S|G|1604
9BDN|1|A18S|G|1605
9BDN|1|A18S|G|1606
9BDN|1|A18S|A|1607
9BDN|1|A18S|U|1608
9BDN|1|A18S|C|1609
9BDN|1|A18S|G|1610
*
9BDN|1|A18S|C|1629
9BDN|1|A18S|A|1630
9BDN|1|A18S|U|1631
9BDN|1|A18S|G|1632
9BDN|1|A18S|A|1633
9BDN|1|A18S|A|1634
9BDN|1|A18S|C|1635

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS18

40S ribosomal protein S18

Chain AS19

Small ribosomal subunit protein eS19