IL_9BDN_096

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_096 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.2694

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BDN|1|A18S|C|1756
9BDN|1|A18S|G|1757
9BDN|1|A18S|G|1758
*
9BDN|1|A18S|C|1774
9BDN|1|A18S|U|1775
9BDN|1|A18S|G|1776

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6