IL_9BDN_098

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_098 not in the Motif Atlas

Homologous match to IL_5TBW_003

Geometric discrepancy: 0.1402

The information below is about IL_5TBW_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9BDN|1|A28S|A|12
9BDN|1|A28S|U|13
9BDN|1|A28S|C|14
*
9BDN|1|A58S|G|143
9BDN|1|A58S|U|144

Current chains

Chain A28S

28S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL08

Large ribosomal subunit protein eL8

Chain AL15

60S ribosomal protein L15

Chain AL25

Large ribosomal subunit protein uL23