IL_9BDN_105

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_105 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.1454

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9BDN|1|A28S|A|121
9BDN|1|A28S|U|122
*
9BDN|1|A28S|A|147
9BDN|1|A28S|A|148
9BDN|1|A28S|A|149
9BDN|1|A28S|U|150
9BDN|1|A28S|G|151
9BDN|1|A28S|U|152

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL08

Large ribosomal subunit protein eL8

Chain AL15

60S ribosomal protein L15