IL_9BDN_108

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*CCGGCGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|G|179
9BDN|1|A28S|C|180
9BDN|1|A28S|G|189
9BDN|1|A28S|G|190
*
9BDN|1|A28S|C|251
9BDN|1|A28S|C|252
9BDN|1|A28S|G|253
9BDN|1|A28S|G|254
9BDN|1|A28S|C|255
9BDN|1|A28S|G|256
9BDN|1|A28S|C|257

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL13

Large ribosomal subunit protein eL13

Chain AL26

60S ribosomal protein L26

Chain AL35

60S ribosomal protein L35

Chain AL37

60S ribosomal protein L37