IL_9BDN_114
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_114 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0831
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BDN|1|A28S|G|415
9BDN|1|A28S|U|416
9BDN|1|A28S|G|417
9BDN|1|A28S|A|418
9BDN|1|A28S|A|419
9BDN|1|A28S|A|420
9BDN|1|A28S|C|421
*
9BDN|1|A58S|G|13
9BDN|1|A58S|U|14
9BDN|1|A58S|G|15
9BDN|1|A58S|G|16
9BDN|1|A58S|A|17
9BDN|1|A58S|U|18
9BDN|1|A58S|C|19
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL17
- 60S ribosomal protein L17
- Chain AL32
- Large ribosomal subunit protein eL32
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