IL_9BDN_116

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCG*UCG

Length

7 nucleotides

Bulged bases

9BDN|1|A28S|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_116 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1649

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9BDN|1|A28S|C|447
9BDN|1|A28S|G|448
9BDN|1|A28S|C|449
9BDN|1|A28S|G|450
*
9BDN|1|A28S|U|1297
9BDN|1|A28S|C|1298
9BDN|1|A28S|G|1299

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL32

Large ribosomal subunit protein eL32

Chain AL33

60S ribosomal protein L35a