IL_9BDN_126

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_126 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2801

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9BDN|1|A28S|G|508
9BDN|1|A28S|A|509
9BDN|1|A28S|U|510
*
9BDN|1|A28S|A|649
9BDN|1|A28S|C|650

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL28

60S ribosomal protein L27a