IL_9BDN_133

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|C|738, 9BDN|1|A28S|C|738|||A, 9BDN|1|A28S|C|924, 9BDN|1|A28S|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_133 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2907

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9BDN|1|A28S|C|737
9BDN|1|A28S|C|738
9BDN|1|A28S|C|738|||A
9BDN|1|A28S|G|739
*
9BDN|1|A28S|C|923
9BDN|1|A28S|C|924
9BDN|1|A28S|C|925
9BDN|1|A28S|G|926

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL14

60S ribosomal protein L14