IL_9BDN_143

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9BDN|1|A28S|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_143 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1822

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9BDN|1|A28S|G|1360
9BDN|1|A28S|G|1361
*
9BDN|1|A28S|C|1376
9BDN|1|A28S|G|1377
9BDN|1|A28S|C|1378
9BDN|1|A28S|C|1379

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL13

Large ribosomal subunit protein eL13

Chain AL15

60S ribosomal protein L15