IL_9BDN_145

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_145 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.2199

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9BDN|1|A28S|C|1431
9BDN|1|A28S|G|1432
9BDN|1|A28S|A|1433
9BDN|1|A28S|G|1434
*
9BDN|1|A28S|C|1450
9BDN|1|A28S|G|1451
9BDN|1|A28S|A|1452
9BDN|1|A28S|G|1453

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL18

Large ribosomal subunit protein eL18