IL_9BDN_150

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_150 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.2185

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

9BDN|1|A28S|G|1550
9BDN|1|A28S|C|1551
*
9BDN|1|A28S|G|1576
9BDN|1|A28S|G|1577
9BDN|1|A28S|U|1578

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL19

60S ribosomal protein L19

Chain AL43

60S ribosomal protein L37a