IL_9BDN_151

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_151 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0917

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9BDN|1|A28S|C|1551
9BDN|1|A28S|G|1552
9BDN|1|A28S|A|1553
9BDN|1|A28S|A|1554
9BDN|1|A28S|G|1555
*
9BDN|1|A28S|U|1572
9BDN|1|A28S|G|1573
9BDN|1|A28S|G|1574
9BDN|1|A28S|A|1575
9BDN|1|A28S|G|1576

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL19

60S ribosomal protein L19

Chain AL43

60S ribosomal protein L37a