IL_9BDN_152

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_152 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0883

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9BDN|1|A28S|G|1586
9BDN|1|A28S|G|1587
9BDN|1|A28S|U|1588
9BDN|1|A28S|C|1589
*
9BDN|1|A28S|G|1605
9BDN|1|A28S|U|1606
9BDN|1|A28S|C|1607

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL37

60S ribosomal protein L37