IL_9BDN_164

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_164 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.3655

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9BDN|1|A28S|G|1753
9BDN|1|A28S|U|1754
9BDN|1|A28S|C|1755
9BDN|1|A28S|U|1756
9BDN|1|A28S|U|1757
*
9BDN|1|A28S|A|1775
9BDN|1|A28S|A|1776
9BDN|1|A28S|C|1777

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL05

60S ribosomal protein L5

Chain AL10

Ribosomal protein L10