IL_9BDN_169

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_169 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.0843

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

9BDN|1|A28S|U|1861
9BDN|1|A28S|U|1862
9BDN|1|A28S|U|1863
*
9BDN|1|A28S|A|1871
9BDN|1|A28S|G|1872
9BDN|1|A28S|A|1873

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL10

Ribosomal protein L10

Chain AL29

Large ribosomal subunit protein eL29