IL_9BDN_177

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAUAGACAG*CCGAAU

Length

16 nucleotides

Bulged bases

9BDN|1|A28S|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|A|1956
9BDN|1|A28S|U|1957
9BDN|1|A28S|A|1958
9BDN|1|A28S|U|1959
9BDN|1|A28S|A|1960
9BDN|1|A28S|G|1961
9BDN|1|A28S|A|1962
9BDN|1|A28S|C|1963
9BDN|1|A28S|A|1964
9BDN|1|A28S|G|1965
*
9BDN|1|A28S|C|2022
9BDN|1|A28S|C|2023
9BDN|1|A28S|G|2024
9BDN|1|A28S|A|2025
9BDN|1|A28S|A|2026
9BDN|1|A28S|U|2027

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL40

Large ribosomal subunit protein eL40

Chain ALP0

60S acidic ribosomal protein P0