IL_9BDN_181

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_181 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.5157

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9BDN|1|A28S|G|2299
9BDN|1|A28S|A|2300
9BDN|1|A28S|G|2301
*
9BDN|1|A28S|C|2334
9BDN|1|A28S|C|2335

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL04

60S ribosomal protein L4

Chain AL32

Large ribosomal subunit protein eL32

Chain ALNW

60S ribosomal protein L28