IL_9BDN_183

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_183 not in the Motif Atlas

Geometric match to IL_7RQB_033

Geometric discrepancy: 0.2295

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

9BDN|1|A28S|U|2312
9BDN|1|A28S|A|2313
9BDN|1|A28S|G|2314
*
9BDN|1|A28S|C|2325
9BDN|1|A28S|G|2326

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL32

Large ribosomal subunit protein eL32

Chain ALNW

60S ribosomal protein L28