IL_9BDN_185

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_185 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.1647

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9BDN|1|A28S|U|2415
9BDN|1|A28S|G|2416
9BDN|1|A28S|A|2417
9BDN|1|A28S|A|2418
9BDN|1|A28S|C|2419
*
9BDN|1|A28S|G|2427
9BDN|1|A28S|A|2428
9BDN|1|A28S|A|2429

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17

Chain AL19

60S ribosomal protein L19

Chain AL39

60S ribosomal protein L39