IL_9BDN_187

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_187 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.1918

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9BDN|1|A28S|G|2476
9BDN|1|A28S|A|2477
9BDN|1|A28S|C|2478
9BDN|1|A28S|G|2479
*
9BDN|1|A28S|C|2499
9BDN|1|A28S|U|2500
9BDN|1|A28S|C|2501

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL08

Large ribosomal subunit protein eL8

Chain AL25

Large ribosomal subunit protein uL23