IL_9BDN_189

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_189 not in the Motif Atlas

Geometric match to IL_2A64_002

Geometric discrepancy: 0.2692

The information below is about IL_2A64_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9BDN|1|A28S|G|2549
9BDN|1|A28S|G|2550
*
9BDN|1|A28S|C|2768
9BDN|1|A28S|U|2769
9BDN|1|A28S|C|2770

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL34

60S ribosomal protein L34