IL_9BDN_211

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_211 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.3095

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9BDN|1|A28S|G|3710
9BDN|1|A28S|A|3711
9BDN|1|A28S|A|3712
9BDN|1|A28S|U|3713
9BDN|1|A28S|G|3714
*
9BDN|1|A28S|C|3739
9BDN|1|A28S|G|3740
9BDN|1|A28S|C|3741

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

60S ribosomal protein L8

Chain ETRN

Transfer RNA; tRNA