IL_9BDN_219

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9BDN|1|A28S|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_219 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1172

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

9BDN|1|A28S|U|3927
9BDN|1|A28S|A|3928
9BDN|1|A28S|G|3929
*
9BDN|1|A28S|U|4181
9BDN|1|A28S|G|4182
9BDN|1|A28S|G|4183
9BDN|1|A28S|G|4184

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL15

60S ribosomal protein L15

Chain AL42

eL42

Chain ETRN

Transfer RNA; tRNA