IL_9BDN_221

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGGUGUAGAAUAAGUG*CACUACUC

Length

25 nucleotides

Bulged bases

9BDN|1|A28S|G|3958, 9BDN|1|A28S|A|3962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|G|3953
9BDN|1|A28S|A|3954
9BDN|1|A28S|G|3955
9BDN|1|A28S|G|3956
9BDN|1|A28S|U|3957
9BDN|1|A28S|G|3958
9BDN|1|A28S|U|3959
9BDN|1|A28S|A|3960
9BDN|1|A28S|G|3961
9BDN|1|A28S|A|3962
9BDN|1|A28S|A|3963
9BDN|1|A28S|U|3964
9BDN|1|A28S|A|3965
9BDN|1|A28S|A|3966
9BDN|1|A28S|G|3967
9BDN|1|A28S|U|3968
9BDN|1|A28S|G|3969
*
9BDN|1|A28S|C|4052
9BDN|1|A28S|A|4053
9BDN|1|A28S|C|4054
9BDN|1|A28S|U|4055
9BDN|1|A28S|A|4056
9BDN|1|A28S|C|4057
9BDN|1|A28S|U|4058
9BDN|1|A28S|C|4059

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA