IL_9BDN_224

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|A|4203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_224 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.1178

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9BDN|1|A28S|G|4191
9BDN|1|A28S|A|4192
*
9BDN|1|A28S|U|4202
9BDN|1|A28S|A|4203
9BDN|1|A28S|C|4204

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL21

60S ribosomal protein L21

Chain AL29

Large ribosomal subunit protein eL29

Chain AL42

eL42