IL_9BDN_231

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_231 not in the Motif Atlas

Geometric match to IL_5TBW_104

Geometric discrepancy: 0.0941

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9BDN|1|A28S|U|4403
9BDN|1|A28S|U|4404
9BDN|1|A28S|G|4405
*
9BDN|1|A28S|U|4439
9BDN|1|A28S|G|4440

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10