IL_9BDN_233

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_233 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0845

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9BDN|1|A28S|C|4412
9BDN|1|A28S|C|4413
9BDN|1|A28S|A|4414
9BDN|1|A28S|A|4415
9BDN|1|A28S|G|4416
*
9BDN|1|A28S|C|4426
9BDN|1|A28S|G|4427
9BDN|1|A28S|A|4428
9BDN|1|A28S|C|4429
9BDN|1|A28S|G|4430

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL40

Large ribosomal subunit protein eL40