IL_9BDN_238

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_238 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3702

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

9BDN|1|A28S|U|4468
9BDN|1|A28S|U|4469
9BDN|1|A28S|G|4470
*
9BDN|1|A28S|C|4485
9BDN|1|A28S|C|4486
9BDN|1|A28S|A|4487
9BDN|1|A28S|A|4488
9BDN|1|A28S|G|4489

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL16

Large ribosomal subunit protein uL13

Chain AL40

Large ribosomal subunit protein eL40