IL_9BDN_262

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9BDN|1|A5S|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_262 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.1917

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

9BDN|1|A5S|C|15
9BDN|1|A5S|A|16
*
9BDN|1|A5S|U|62
9BDN|1|A5S|C|63
9BDN|1|A5S|G|64

Current chains

Chain A5S

5S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL05

60S ribosomal protein L5

Chain AL10

Ribosomal protein L10

Chain AL11

60S ribosomal protein L11