IL_9BDN_279

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCUCAGCGUG*CCGUUGAACCCC

Length

23 nucleotides

Bulged bases

9BDN|1|A18S|U|1585, 9BDN|1|A18S|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A18S|G|1540
9BDN|1|A18S|G|1541
9BDN|1|A18S|C|1542
9BDN|1|A18S|U|1543
9BDN|1|A18S|C|1544
9BDN|1|A18S|A|1545
9BDN|1|A18S|G|1546
9BDN|1|A18S|C|1547
9BDN|1|A18S|G|1548
9BDN|1|A18S|U|1549
9BDN|1|A18S|G|1550
*
9BDN|1|A18S|C|1582
9BDN|1|A18S|C|1583
9BDN|1|A18S|G|1584
9BDN|1|A18S|U|1585
9BDN|1|A18S|U|1586
9BDN|1|A18S|G|1587
9BDN|1|A18S|A|1588
9BDN|1|A18S|A|1589
9BDN|1|A18S|C|1590
9BDN|1|A18S|C|1591
9BDN|1|A18S|C|1592
9BDN|1|A18S|C|1593

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS03

40S ribosomal protein S3

Chain AS05

Ribosomal protein S5

Chain AS16

Small ribosomal subunit protein uS9

Chain AS19

Small ribosomal subunit protein eS19

Chain AS20

40S ribosomal protein S20

Chain AS25

40S ribosomal protein S25

Chain AS29

40S ribosomal protein S29