IL_9BDN_288

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_288 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0599

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

9BDN|1|A28S|G|2847
9BDN|1|A28S|G|2848
9BDN|1|A28S|A|2849
9BDN|1|A28S|A|2850
9BDN|1|A28S|G|2851
9BDN|1|A28S|U|2852
9BDN|1|A28S|C|2853
9BDN|1|A28S|G|2854
9BDN|1|A28S|G|2855
*
9BDN|1|A28S|C|3837
9BDN|1|A28S|U|3838
9BDN|1|A28S|G|3839
9BDN|1|A28S|U|3840
9BDN|1|A28S|C|3841

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL23

60S ribosomal protein L23