IL_9BDN_296

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9BDN|1|A18S|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_296 not in the Motif Atlas

Homologous match to IL_8CRE_424

Geometric discrepancy: 0.1657

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9BDN|1|A18S|G|665
9BDN|1|A18S|U|666
9BDN|1|A18S|U|667
9BDN|1|A18S|A|668
9BDN|1|A18S|A|669
9BDN|1|A18S|A|670
9BDN|1|A18S|A|671
*
9BDN|1|A18S|U|1161
9BDN|1|A18S|C|1162

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS23

40S ribosomal protein S23

Chain AS26

eS26