IL_9BDP_003
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 9BDP|1|A18S|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_003 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3261
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
9BDP|1|A18S|C|37
9BDP|1|A18S|A|38
9BDP|1|A18S|A|39
9BDP|1|A18S|A|40
*
9BDP|1|A18S|U|514
9BDP|1|A18S|G|515
9BDP|1|A18S|A|516
9BDP|1|A18S|C|517
9BDP|1|A18S|G|518
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS04
- 40S ribosomal protein S4
- Chain AS09
- 40S ribosomal protein S9
- Chain EF1A
- Elongation factor 1-alpha
Coloring options: