IL_9BDP_015

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_015 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2584

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9BDP|1|A18S|C|188
9BDP|1|A18S|U|189
9BDP|1|A18S|G|190
9BDP|1|A18S|A|191
9BDP|1|A18S|C|192
*
9BDP|1|A18S|G|207
9BDP|1|A18S|G|208
9BDP|1|A18S|A|209
9BDP|1|A18S|U|210
9BDP|1|A18S|G|211

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS08

40S ribosomal protein S8