3D structure

PDB id
9BDP (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAU*AAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BDP_025 not in the Motif Atlas
Homologous match to IL_8C3A_414
Geometric discrepancy: 0.1611
The information below is about IL_8C3A_414
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_42997.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
18

Unit IDs

9BDP|1|A18S|C|459
9BDP|1|A18S|A|460
9BDP|1|A18S|U|461
*
9BDP|1|A18S|A|468
9BDP|1|A18S|A|469
9BDP|1|A18S|G|470

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AL23
60S ribosomal protein L23
Chain AS06
40S ribosomal protein S6

Coloring options:


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