IL_9BDP_033

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUG,CAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_033 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.1282

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9BDP|1|A18S|U|595
9BDP|1|A18S|U|596
9BDP|1|A18S|G|597
*
9BDP|1|A18S|C|639
9BDP|1|A18S|A|640
9BDP|1|A18S|A|641

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS23

40S ribosomal protein S23

Chain AS30

40S ribosomal protein S30