IL_9BDP_036

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_036 not in the Motif Atlas

Homologous match to IL_4V88_417

Geometric discrepancy: 0.1336

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BDP|1|A18S|G|673
9BDP|1|A18S|C|674
9BDP|1|A18S|U|675
*
9BDP|1|A18S|A|1030
9BDP|1|A18S|A|1031
9BDP|1|A18S|C|1032

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AS13

40S ribosomal protein S13