IL_9BDP_038

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_038 not in the Motif Atlas

Geometric match to IL_4E48_004

Geometric discrepancy: 0.2082

The information below is about IL_4E48_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9BDP|1|A18S|G|692
9BDP|1|A18S|A|693
9BDP|1|A18S|G|694
*
9BDP|1|A18S|U|732
9BDP|1|A18S|C|733
9BDP|1|A18S|C|734

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS07

Small ribosomal subunit protein eS7

Chain AS22

40S ribosomal protein S15a