IL_9BDP_047

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9BDP|1|A18S|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_047 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2629

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

9BDP|1|A18S|G|925
9BDP|1|A18S|A|926
9BDP|1|A18S|C|927
*
9BDP|1|A18S|G|1014
9BDP|1|A18S|U|1015
9BDP|1|A18S|U|1016
9BDP|1|A18S|U|1017

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS13

40S ribosomal protein S13

Chain AS27

40S ribosomal protein S27