IL_9BDP_067

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_067 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3638

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

9BDP|1|A18S|A|1291
9BDP|1|A18S|C|1292
9BDP|1|A18S|A|1293
9BDP|1|A18S|G|1294
*
9BDP|1|A18S|C|1305
9BDP|1|A18S|U|1306
9BDP|1|A18S|U|1307
9BDP|1|A18S|U|1308

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS15

40S ribosomal protein S15

Chain AS29

40S ribosomal protein S29