IL_9BDP_073
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 9BDP|1|A18S|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_073 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.3405
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9BDP|1|A18S|C|1395
9BDP|1|A18S|A|1396
9BDP|1|A18S|U|1397
9BDP|1|A18S|G|1398
9BDP|1|A18S|C|1399
*
9BDP|1|A18S|G|1447
9BDP|1|A18S|A|1448
9BDP|1|A18S|G|1449
9BDP|1|A18S|G|1450
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain ARAC
- Receptor of activated protein C kinase 1
- Chain AS16
- Small ribosomal subunit protein uS9
- Chain AS17
- 40S ribosomal protein S17
- Chain AS20
- 40S ribosomal protein S20
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