IL_9BDP_075

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAC*GUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_075 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2817

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9BDP|1|A18S|U|1407
9BDP|1|A18S|U|1408
9BDP|1|A18S|A|1409
9BDP|1|A18S|C|1410
*
9BDP|1|A18S|G|1431
9BDP|1|A18S|U|1432
9BDP|1|A18S|A|1438
9BDP|1|A18S|A|1439

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS16

Small ribosomal subunit protein uS9

Chain AS20

40S ribosomal protein S20