IL_9BDP_078

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9BDP|1|A18S|C|1553, 9BDP|1|A18S|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDP|1|A18S|G|1550
9BDP|1|A18S|U|1551
9BDP|1|A18S|G|1552
9BDP|1|A18S|C|1553
9BDP|1|A18S|C|1554
9BDP|1|A18S|U|1555
9BDP|1|A18S|A|1556
9BDP|1|A18S|C|1557
9BDP|1|A18S|C|1558
*
9BDP|1|A18S|G|1577
9BDP|1|A18S|U|1578
9BDP|1|A18S|A|1579
9BDP|1|A18S|A|1580
9BDP|1|A18S|C|1581
9BDP|1|A18S|C|1582

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS03

40S ribosomal protein S3

Chain AS10

40S ribosomal protein S10

Chain AS19

Small ribosomal subunit protein eS19

Chain AS20

40S ribosomal protein S20

Chain AS29

40S ribosomal protein S29