IL_9BDP_080
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_080 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.0998
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BDP|1|A18S|G|1604
9BDP|1|A18S|G|1605
9BDP|1|A18S|G|1606
9BDP|1|A18S|A|1607
9BDP|1|A18S|U|1608
9BDP|1|A18S|C|1609
9BDP|1|A18S|G|1610
*
9BDP|1|A18S|C|1629
9BDP|1|A18S|A|1630
9BDP|1|A18S|U|1631
9BDP|1|A18S|G|1632
9BDP|1|A18S|A|1633
9BDP|1|A18S|A|1634
9BDP|1|A18S|C|1635
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS18
- 40S ribosomal protein S18
- Chain AS19
- Small ribosomal subunit protein eS19
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