IL_9BDP_099
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAUC*GUC
- Length
- 7 nucleotides
- Bulged bases
- 9BDP|1|A28S|U|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_099 not in the Motif Atlas
- Geometric match to IL_4V88_417
- Geometric discrepancy: 0.2085
- The information below is about IL_4V88_417
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
9BDP|1|A28S|G|11
9BDP|1|A28S|A|12
9BDP|1|A28S|U|13
9BDP|1|A28S|C|14
*
9BDP|1|A58S|G|143
9BDP|1|A58S|U|144
9BDP|1|A58S|C|145
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL08
- Large ribosomal subunit protein eL8
- Chain AL15
- 60S ribosomal protein L15
- Chain AL25
- Large ribosomal subunit protein uL23
Coloring options: