IL_9BDP_107

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_107 not in the Motif Atlas

Geometric match to IL_5TBW_027

Geometric discrepancy: 0.2236

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BDP|1|A28S|G|176
9BDP|1|A28S|G|177
9BDP|1|A28S|C|178
*
9BDP|1|A28S|G|258
9BDP|1|A28S|C|259
9BDP|1|A28S|C|260

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL35

60S ribosomal protein L35