IL_9BDP_113
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9BDP|1|A28S|C|406, 9BDP|1|A28S|G|409, 9BDP|1|A28S|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_113 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1763
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
9BDP|1|A28S|G|387
9BDP|1|A28S|A|388
9BDP|1|A28S|A|389
9BDP|1|A28S|C|390
*
9BDP|1|A28S|G|401
9BDP|1|A28S|A|402
9BDP|1|A28S|G|403
9BDP|1|A28S|U|404
9BDP|1|A28S|U|405
9BDP|1|A28S|C|406
9BDP|1|A28S|A|407
9BDP|1|A28S|A|408
9BDP|1|A28S|G|409
9BDP|1|A28S|A|410
9BDP|1|A28S|G|411
9BDP|1|A28S|G|412
9BDP|1|A28S|G|413
9BDP|1|A28S|C|414
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL17
- 60S ribosomal protein L17
- Chain AL26
- 60S ribosomal protein L26
- Chain AL39
- 60S ribosomal protein L39
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