IL_9BDP_116

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCG*UC

Length

5 nucleotides

Bulged bases

9BDP|1|A28S|C|449

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_116 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3581

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9BDP|1|A28S|G|448
9BDP|1|A28S|C|449
9BDP|1|A28S|G|450
*
9BDP|1|A28S|U|1297
9BDP|1|A28S|C|1298

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL32

Large ribosomal subunit protein eL32

Chain AL33

60S ribosomal protein L35a